PORTFOLIO / asist. Marko Njirjak mag. ing. comp.

Portfolio

asist.

Marko Njirjak

mag. ing. comp.

Faculty of Engineering

Contact

Visibility

Research

Journal Articles

2024.

Reshaping the discovery of self-assembling peptides with generative AI guided by hybrid deep learning

Njirjak, Marko; Žužić, Lucija; Babić, Marko; Janković, Patrizia; Otović, Erik; Kalafatovic, Daniela; Mauša, Goran

Nature Machine Intelligence

https://www.nature.com/articles/s42256-024-00928-1

Q1 WOS Exc

2023.

Configurable soft computing-based generative model: The search for catalytic peptides

Mauša, Goran; Njirjak, Marko; Otović, Erik; Kalafatovic Daniela

MRS Advances

https://doi.org/10.1557/s43580-023-00629-8

Q4 WOS

2022.

Sequential Properties Representation Scheme for Recurrent Neural Network-Based Prediction of Therapeutic Peptides

Otović, Erik; Njirjak, Marko; Kalafatovic, Daniela; Mauša, Goran

Journal of chemical information and modeling

http://dx.doi.org/10.1021/acs.jcim.2c00526

Q1 WOS

2022.

The Choice of Time–Frequency Representations of Non-Stationary Signals Affects Machine Learning Model Accuracy: A Case Study on Earthquake Detection from LEN-DB Data

Njirjak, Marko; Otović, Erik; Jozinović, Dario; Lerga, Jonatan; Mauša, Goran; Michelini, Alberto; Štajduhar, Ivan

Mathematics

http://dx.doi.org/10.3390/math10060965

Q1 WOS Exc

2022.

Intra-domain and cross-domain transfer learning for time series data – How transferable are the features?

Otović, Erik; Njirjak, Marko; Jozinović, Dario; Mauša, Goran; Michelini, Alberto; S̆tajduhar, Ivan

Knowledge-Based Systems

http://dx.doi.org/10.1016/j.knosys.2021.107976

Q1 WOS

Invited Lectures

30.8.2024.

Overcoming antibiotic resistance: A machine learning pipeline for antimicrobial peptide discovery

Njirjak, Marko; Otović, Erik

Firenca, Italija

https://eps2024.com/

7.2023.

Efficient evolutionary computing

Otović, Erik; Njirjak, Marko; Mauša, Goran

Coimbra, Portugal

7.2022.

Applying Soft Computing for Sustainability

Otović, Erik; Njirjak, Marko; Mauša, Goran

Rijeka, Hrvatska

Conference Presentations

25.8.2024. - 31.8.2024.

AI-driven design of β-secretase 1 inhibitors

Njirjak, Marko; Kalafatovic, Daniela; Mauša, Goran

Poster

37th European Peptide Symposium and 14th International Peptide Symposium Firenca, Italija

https://eps2024.com/

6.2023.

Soft Computing Guided Discovery of Active Peptides

Mauša, Goran; Njirjak, Marko; Otović, Erik; Žužić, Lucija; Babić, Marko; Janković, Patrizia; Kalafatovic, Daniela

Poster, flash talk

28th American Peptide Symposium Scottsdale, SAD

1.12.2022.

Genetic Algorithm-enhanced Parallel Chemical Space Exploration Utilising Multiple Peptide Libraries

Njirjak, Marko; Kalafatovic, Daniela; Mauša, Goran

Poster

The 11th Austrian Peptide Symposium Beč, Austrija

30.10.2022. - 04.11.2022.

Soft computing for constructive peptide design and peptide activity prediction

Mauša, Goran; Otović, Erik; Njirjak, Marko; Erjavac, Ivan; Kalafatovic, Daniela

Poster

Chemistry and Biology of Peptides Gordon Research Conference Oxnard, Kalifornija, SAD

01.09.2022. - 02.09.2022.

Genetic Algorithm-Enhanced Parallel Chemical Space Exploration Utilising Multiple Peptide Libraries

Njirjak, Marko; Kalafatovic, Daniela; Mauša, Goran

Poster

5th RSC-BMCS / RSC-CICAG Artificial Intelligence in Chemistry Cambridge, Ujedinjeno Kraljevstvo

27.09.2021. - 28.09.2021.

Machine learning guided genetic algorithm for the discovery of novel antimicrobial peptides

Njirjak, Marko; Otović Erik; Kalafatović, Daniela; Mauša, Goran

Poster

4th RSC‐BMCS / RSC‐CICAG Artificial Intelligence in Chemistry Symposium London, Ujedinjeno Kraljevstvo

19.04.2021. - 30.04.2021.

Intra-domain and cross-domain transfer learning for time series

Otović, Erik; Njirjak, Marko; Jozinović, Dario; Mauša, Goran; Michelini, Alberto; Štajduhar, Ivan

Poster

EGU General Assembly 2021 Beč, Austrija

http://dx.doi.org/10.5194/egusphere-egu21-12142

19.04.2021. - 30.04.2021.

Machine Learning Classification of Cohen's Class Time-Frequency Representations of Non- Stationary Signals: Effects on Earthquake Detection

Njirjak, Marko; Otović, Erik; Jozinović, Dario; Lerga, Jonatan; Mauša, Goran; Michelini, Alberto; Štajduhar, Ivan

Poster

EGU General Assembly 2021 Beč, Austrija

http://dx.doi.org/10.5194/egusphere-egu21-9670

30.9.2020.

Smartphone Based Range of Motion Measurement in Physiotherapy

Njirjak, Marko; Otović, E; Budimir, Marko; Vlahović, H; Tomić, M; Marijančić, V

Prezentacija

2020 43rd International Convention on Information, Communication and Electronic Technology (MIPRO) Opatija/online

17.09.2020. - 19.09.2020.

Genetic Algorithm Parametrization for Informed Exploration of Short Peptides Chemical Space

Otovic, Erik; Njirjak, Marko; Zuzic, Ivana; Kalafatovic, Daniela; Mausa, Goran

Poster

SoftCOM 2020 Hvar, Hrvatska

http://dx.doi.org/10.23919/softcom50211.2020.9238187

Projects

Research Projects

2020. - 2025.

Design of short catalytic peptides and peptide assemblies

Suradnik

HRZZ 1,999,600.00 HRK

2020. - 2023.

Applying Machine Learning for the Discovery of Peptides with Catalytic Activity

Suradnik

Sveučilište u Rijeci

2020. - 2023.

SUSTRAINABLE - Promoting Sustainability as a Fundamental Driver in Software development Training and Education

Suradnik

Erasmus+

2020. - 2021.

SARS-CoV-2 Supramolecular Mimetics for Discovery of Peptides That Induce Viral Entrapment

Suradnik

Sveučilište u Rijeci

Research Projects - Project Member/Project Researcher

UNIRI-plus PROJECTS 2018